PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005773t1
Common NameTCM_005773
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 377aa    MW: 41491.5 Da    PI: 9.8262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005773t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.51.3e-2156147187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gf...erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                       +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++++r ++    ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++a
  Thecc1EG005773t1  56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVARRcPLatpPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFTSSWVHFKRMDA 147
                       7*************************************44423333489*************************97799***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2355148No hitNo description
SMARTSM005952.0E-1464153IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSNPSSPSPQ RDPPSNTSPP PPSELPLALP APPAAASTPP TAATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVARRCPLA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFTSSWV HFKRMDAMEK GPNVKPDYNS DSPDEENDED DEDDQDHDFY  180
EDGYKNGSVN TRSVQKLYRN GIGNSGGSVS GSGGAGGSSG GFRIRIPTGV SIAQPGPRYY  240
GKLDQKYGAS PNSNPNPNAN PHPNKGNFSV SGSGSGYGTR VLRGFEETPG KTAASGKRER  300
DAVAEMVTAI KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA  360
VSERKKKPKR MPSPES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052379.10.0Transcription factor, putative
TrEMBLA0A061DWU00.0A0A061DWU0_THECC; Transcription factor, putative
STRINGPOPTR_0014s05010.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-78Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]