PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005773t1

Common Name

TCM_005773

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 377aa MW: 41491.5 Da PI: 9.8262

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005773t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.5	1.3e-21	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gf...erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++++r ++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a Thecc1EG005773t1 56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVARRcPLatpPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFTSSWVHFKRMDA 147 7***********************************44423333489*********************97799*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-23	55	148	No hit	No description
SMART	SM00595	2.0E-14	64	153	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSNPSSPSPQ RDPPSNTSPP PPSELPLALP APPAAASTPP TAATVTPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVARRCPLA TPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFTSSWV HFKRMDAMEK GPNVKPDYNS DSPDEENDED DEDDQDHDFY 180 EDGYKNGSVN TRSVQKLYRN GIGNSGGSVS GSGGAGGSSG GFRIRIPTGV SIAQPGPRYY 240 GKLDQKYGAS PNSNPNPNAN PHPNKGNFSV SGSGSGYGTR VLRGFEETPG KTAASGKRER 300 DAVAEMVTAI KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA 360 VSERKKKPKR MPSPES*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSNPSSPSPQ RDPPSNTSPP PPSELPLALP APPAAASTPP TAATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVARRCPLA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFTSSWV HFKRMDAMEK GPNVKPDYNS DSPDEENDED DEDDQDHDFY  180
EDGYKNGSVN TRSVQKLYRN GIGNSGGSVS GSGGAGGSSG GFRIRIPTGV SIAQPGPRYY  240
GKLDQKYGAS PNSNPNPNAN PHPNKGNFSV SGSGSGYGTR VLRGFEETPG KTAASGKRER  300
DAVAEMVTAI KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA  360
VSERKKKPKR MPSPES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007052379.1	0.0	Transcription factor, putative
TrEMBL	A0A061DWU0	0.0	A0A061DWU0_THECC; Transcription factor, putative
STRING	POPTR_0014s05010.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-78	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG005773t1
Entrez Gene	18614526

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]